GgaEX1049332 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34645144-34646793:+
Coord C1 exon
chr7:34645144-34645253
Coord A exon
chr7:34645955-34646033
Coord C2 exon
chr7:34646697-34646793
Length
79 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCTTCCCTCAAAGCCG
3' ss Score
8.75
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
ATGAGCGGCACCGTGAGCGCCGCCGCCGGTCTGCGGCCGCTGCTCGAGACGCTGCAGGACCCCGCAGCCCCCGCGGGGGACCTCACGGACGCGCATCTCTCTCTCGTCAA
Seq A exon
CCGCCTGTCTGGTGAGGAAGGCAGAGAATTCGTTGCAGCTGTCAGAAAACACTTCCCTCGACTTTGCAAAGTATTTAAG
Seq C2 exon
GCACACATTTCTAGTGAAAATTCAGAGCTGAGTAACGCAGCATTACAGGCCTTGGGGTTCTGTGTTTTTAATTCGAAGATTACCTCTGAATTATCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'0-1,'0-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=0.000 C2=0.008
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=PU(21.7=48.6)
A:
PF122313=Rif1_N=FE(31.3=100)
C2:
PF122313=Rif1_N=FE(38.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTCGAGACGCTGCAG
R:
CGGATAATTCAGAGGTAATCTTCGA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]