HsaEX6015905 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152266928-152271433:+
Coord C1 exon
chr2:152266928-152267041
Coord A exon
chr2:152267774-152267852
Coord C2 exon
chr2:152271337-152271433
Length
79 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCCTGCTTTTTAAGTCG
3' ss Score
6.9
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGGCCGACATGACGGCCAGGGGTCAGAGCCCCCTCGCGCCGCTGTTGGAGACTTTGGAAGACCCTTCTGCCTCCCATGGAGGGCAGACTGACGCTTACCTGACTCTGACCAG
Seq A exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTAATTACAGAAATTGAGAAAAAACTTCCTCGGCTGTACAAAGTTTTAAAG
Seq C2 exon
ACTCACATTTCCAGTCAAAACTCGGAGCTGAGTAGTGCTGCTCTACAAGCCCTGGGGTTTTGCTTATATAATCCCAAAATTACCTCAGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'3-5,'3-4,4-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.879 A=0.173 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PU(23.1=94.3),PF122313=Rif1_N=PU(8.2=51.4)
A:
PF032249=V-ATPase_H_N=FE(30.2=100),PF122313=Rif1_N=FE(36.6=100),PF053776=FlaC_arch=PU(48.5=59.3)
C2:
PF032249=V-ATPase_H_N=PD(29.1=92.6),PF122313=Rif1_N=PD(35.2=92.6),PF053776=FlaC_arch=PD(45.5=55.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACGGCCAGGGGTCAG
R:
TAAGCAAAACCCCAGGGCTTG
Band lengths:
170-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)