BtaEX0030452 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44813723-44818737:-
Coord C1 exon
chr2:44818634-44818737
Coord A exon
chr2:44817598-44817676
Coord C2 exon
chr2:44813723-44813819
Length
79 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTCTGCTTTTAAGTCG
3' ss Score
5.19
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ATGACGGCCGCGGATCAGAGCCCCCTGGCACCGCTGTTGGAGACTTTGGAAGACCCTTCCGCCTCCCTTGGAGAGCAGACCGACGCTTACCTGACCCTGACCAG
Seq A exon
TCGTATGACTGGAGAAGATGGAAAAGAAATCATTACAGAAATTGAGAAAAAACTTCCTCAGCTATTTAAAGTTTTAAAG
Seq C2 exon
ACTCACATTGCCAGTCAAAACTCAGAGCTCAGTAGTGCTGCTCTACAGGCCTTGGGGTTTTGCTTATATAATCCCAAAATTGCCTCTGGATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF032249=V-ATPase_H_N=PU(27.7=94.3),PF122313=Rif1_N=PU(5.0=51.4)
A:
PF032249=V-ATPase_H_N=FE(21.8=100),PF122313=Rif1_N=FE(7.3=100)
C2:
PF032249=V-ATPase_H_N=FE(26.9=100),PF122313=Rif1_N=FE(8.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGCTGTTGGAGACTTTGG
R:
AATCCAGAGGCAATTTTGGGA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development