MmuEX0039822 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52074247-52077108:+
Coord C1 exon
chr2:52074247-52074325
Coord A exon
chr2:52076081-52076177
Coord C2 exon
chr2:52076981-52077108
Length
97 bp
Sequences
Splice sites
3' ss Seq
CAATGTACTTTGTTTTGTAGGCT
3' ss Score
7.39
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TCGTATGACTGGAGAAGAAGGAAAAGAAGTCATTGCAGAAATCGAGAAAAACCTTTCTCGGCTGTACACGGTTTTAAAG
Seq A exon
GCTCACATTTCCAGTCAGAACTCAGAACTGAGCAGTGCTGCTTTGCAAGCCTTGGGATTTTGTTTATATAATCCCAGAATTACCTCAGGATTGTCAG
Seq C2 exon
AGGCAAATATTCAAGAACTGCTTTTAACCTTGAATGGTATCATTAAGAGTTCAGACAAAAATGTGTGTACCAGGGCACTGTGGGTAATATCCAAACAGACGTTTCCTGCTGAACTTGTTAGCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202_MULTIEX1-3/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(7.1=100)
A:
PF122313=Rif1_N=FE(8.8=100)
C2:
PF122313=Rif1_N=FE(11.5=100)
Main Skipping Isoform:
ENSMUST00000069794fB3446
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATGACTGGAGAAGAAGGA
R:
ATTACCCACAGTGCCCTGGTA
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types