RnoEX6016766 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37600857-37603862:+
Coord C1 exon
chr3:37600857-37600935
Coord A exon
chr3:37602903-37602999
Coord C2 exon
chr3:37603735-37603862
Length
97 bp
Sequences
Splice sites
3' ss Seq
CATGTGATTTTGTTTTGTAGGCT
3' ss Score
9.68
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TCGTATGACAGGAGAAGAAGGAAAAGAAGTTATTGCAGAAATCGAGAAAAACCTTCCTCGGTTGTACACGGTTTTAAAG
Seq A exon
GCTCACATTTGCAGTCAGAGCTCAGAACTGAGTAGTGCTGCTCTACAAGCCTTGGGATTTTGTTTATATAATCCCAGAATTACCTCAGGATTATCAG
Seq C2 exon
AGACAAATATTCAAGAACTGCTATTAACCTTGAATGGTATCATTAAGAGTTCAGACAAAAATGTGTGTACCAGGGCACTGTGGGTAATATCCAAACAGACATTTCCTACTGAACTTGTTAGCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(7.1=100)
A:
PF122313=Rif1_N=FE(8.8=100)
C2:
PF122313=Rif1_N=FE(11.5=100)
Main Skipping Isoform:
ENSRNOT00000090575fB12454
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTATGACAGGAGAAGAAGGA
R:
ATTACCCACAGTGCCCTGGTA
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]