GgaEX1049333 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34645955-34648000:+
Coord C1 exon
chr7:34645955-34646033
Coord A exon
chr7:34646697-34646793
Coord C2 exon
chr7:34647870-34648000
Length
97 bp
Sequences
Splice sites
3' ss Seq
ACCTTGTTTTGTTTTTCCAGGCA
3' ss Score
10.73
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
CCGCCTGTCTGGTGAGGAAGGCAGAGAATTCGTTGCAGCTGTCAGAAAACACTTCCCTCGACTTTGCAAAGTATTTAAG
Seq A exon
GCACACATTTCTAGTGAAAATTCAGAGCTGAGTAACGCAGCATTACAGGCCTTGGGGTTCTGTGTTTTTAATTCGAAGATTACCTCTGAATTATCCG
Seq C2 exon
CATCTGAAGTAGAAGATTTGCTTTCCACATTGAACAGCATTGCTGTGAAGACTTCAGACAAAAACACTCGCACTCGGGCACTTTGGGTGATCTCTAAGCAGACGTTTCCTTCTGAAATTATTAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
PF122313=Rif1_N=FE(31.3=100)
A:
PF122313=Rif1_N=FE(38.6=100)
C2:
PF122313=Rif1_N=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGTGAGGAAGGCAGAGA
R:
GAGATCACCCAAAGTGCCCG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]