MmuALTD1022893-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52072766-52073253:+
Coord C1 exon
chr2:52072766-52072866
Coord A exon
chr2:52072867-52072945
Coord C2 exon
chr2:52073137-52073253
Length
79 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
GTCTTCCGGCCTCGCTGCAGGGT
3' ss Score
8.23
Exon sequences
Seq C1 exon
TGGATTGGCTCGAGCCTCTCCCGCCAGGCCTGCCCGGCTCCCGCGCGCCGCTGGGCCCGCCCCCCGCCGCCATCTTGGTCGTGGAGGAGCGGGCTGCACGC
Seq A exon
GTGAGTAAATAAGCGCGAGCCGGGAGCGGACGGCGGGCCCCGGGGCGGCGAGCTGCGGAGCGGACTTCCCGCGTGGGGG
Seq C2 exon
GGTGGCGGCCGACATGACGGCCCCAGGTCGCAGCCCCCTGGAGCCGCTTCTGGAGACTTGGGAAGACCCCTCGGTGCCTCCGGGAGAGCAGACGGACGCCTACCTAACTCTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-1-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.927
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF122313=Rif1_N=PU(4.7=48.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCATCTTGGTCGTGGAG
R:
CTGGTCAGAGTTAGGTAGGCGT
Band lengths:
151-230
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types