MmuEX0039819 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52116248-52116950:+
Coord C1 exon
chr2:52116248-52116394
Coord A exon
chr2:52116668-52116745
Coord C2 exon
chr2:52116835-52116950
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCTACTTCTGTCTAGCAT
3' ss Score
6.53
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
Exon sequences
Seq C1 exon
ATTAGACGTGTCTCGTTTGCAGATCCAATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGTTGCTCTGTTGTTAGATCTCATTCTTCAAATAGCTCTCCCATAATAAAAAGTGTTAAAACTTCACCTACTTCACACTCTAAG
Seq A exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACAGAGCTCTAAATTTAAGAGCCCAAAGAAGTGTTTA
Seq C2 exon
ATTACAGAAATGGCCCAAGAATCCATGCTGTCCCCAACAGAAAGTGTTTACCCAGCTTTGGTGAACTGTGCAGCATCAGTTGACATCATTTTACCTCAGATTACATCAAATATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=0.538 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGTCTCGTTTGCAGATCCA
R:
GGGACAGCATGGATTCTTGGG
Band lengths:
175-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types