BtaEX0030456 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44768095-44768822:-
Coord C1 exon
chr2:44768676-44768822
Coord A exon
chr2:44768300-44768377
Coord C2 exon
chr2:44768095-44768210
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTTCTTCTGTCTAGCAT
3' ss Score
8.24
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GTTCGCCGTGTCTCCTTTGCAGATCCTATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGATGCTCTATTGTTAGGTGCCATTCTTCAAATAGTTCTCTCATGGTAAAAAGTGTTAAAACTTCACCTACTGTGCAATCTAAG
Seq A exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACGTAGCTCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq C2 exon
ATTGCAGAAATGGCTAAGGAATCTGTGCCATGCCCAACAGAAAGTGTTTACCCTGCTTTGGTGAACTGTGTAGCACCAGTTGAAATCATTTTACCTCAGATTACATCCAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.365 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGTCTCCTTTGCAGATCC
R:
TGTTGGGCATGGCACAGATTC
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development