GgaEX0018882 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34670304-34670989:+
Coord C1 exon
chr7:34670304-34670441
Coord A exon
chr7:34670710-34670787
Coord C2 exon
chr7:34670874-34670989
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCTTTTTCTATCCAGCAT
3' ss Score
9.33
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
Exon sequences
Seq C1 exon
ATTCGTCGGGTCTCTTTTGCCAATCCCATCTATCAGGAAGGACTGGCTGACGACATAGACAGGAGAAGTCCTGTCATTAGATCCCATTCTTCACCGTCTTCACGAAGTCTTAAAATCTTATCTAATATTCAGACTAAG
Seq A exon
CATATTACAACTCCAACCAAAGGATTTCTGTCCCCAGGATCTCGTAACCCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq C2 exon
ATGACAGAAATGGTGAAGGAGTCACTGCCTTCCCCTACGGAATGTGTGTATCCTGCCTTAGCTGGGTGTAAGGCACCCGTTGATGTAATTTTACCTCAGATCACATCAAATATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.615 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTGACGACATAGACAGGA
R:
GTGCCTTACACCCAGCTAAGG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]