GgaINT0050211 @ galGal4
Intron Retention
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34670710-34670989:+
Coord C1 exon
chr7:34670710-34670787
Coord A exon
chr7:34670788-34670873
Coord C2 exon
chr7:34670874-34670989
Length
86 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
3' ss Seq
ATTCTTCTGTGTTATTTCAGATG
3' ss Score
9.83
Exon sequences
Seq C1 exon
CATATTACAACTCCAACCAAAGGATTTCTGTCCCCAGGATCTCGTAACCCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq A exon
GTAAGAAGTGCTTTGGTTCACGTTTCTTACTTTCTCGTATTCAGTTGTGTGATAGTTAATCTAATCATTCTTCTGTGTTATTTCAG
Seq C2 exon
ATGACAGAAATGGTGAAGGAGTCACTGCCTTCCCCTACGGAATGTGTGTATCCTGCCTTAGCTGGGTGTAAGGCACCCGTTGATGTAATTTTACCTCAGATCACATCAAATATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484:ENSGALT00000037786:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.615 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAACTCCAACCAAAGGATTTCTGT
R:
GGTAAAATTACATCAACGGGTGCC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]