RnoINT0127088 @ rn6
Intron Retention
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37642582-37642865:+
Coord C1 exon
chr3:37642582-37642659
Coord A exon
chr3:37642660-37642749
Coord C2 exon
chr3:37642750-37642865
Length
90 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
3' ss Seq
CCTTTGACATTTATTTTAAGATT
3' ss Score
6.73
Exon sequences
Seq C1 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACAGAGCTCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq A exon
GTAAGAAGTGCTTTAGTTTTTATGTAATTTTATACTTTATACTTTCAGTCCTGTAACCTCTACTTAATGGCCTTTGACATTTATTTTAAG
Seq C2 exon
ATTACAGAAATGGCCCAAGAATCCATGCTATCCCCAACAGAAAGTGTTTACCCAGCTTTGGTGAACTGTGCAGCATCAGTTGACATCATTTTACCTCAGATTACATCAAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901:ENSRNOT00000090575:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.462 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCCCCAGGATCACAGAG
R:
CACATGTTTGATGTAATCTGAGGT
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]