HsaINT1029339 @ hg38
Intron Retention
Gene
ENSG00000080345 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:151468474-151468756:+
Coord C1 exon
chr2:151468474-151468551
Coord A exon
chr2:151468552-151468640
Coord C2 exon
chr2:151468641-151468756
Length
89 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
3' ss Seq
CTTCTGAAATTTATTCTAAGATT
3' ss Score
4.47
Exon sequences
Seq C1 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACGTAGCCCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq A exon
GTAAGAAGTGCTTTAGTTTTCATGTCACTTTATATTTTCATGTTCAGTCAGTTGACCTCTGTGTAACAGCTTCTGAAATTTATTCTAAG
Seq C2 exon
ATTTCAGAAATGGCCAAAGAATCCATACCATGCCCAACAGAAAGTGTTTACCCACCATTGGTGAACTGTGTGGCACCAGTTGACATCATTTTACCTCAGATTACATCAAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345:ENST00000243326:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.506 A=NA C2=0.057
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCACTTCAGCCAAAGGATTTCT
R:
GGTAAAATGATGTCAACTGGTGCC
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains