RnoEX0075845 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37642160-37642865:+
Coord C1 exon
chr3:37642160-37642306
Coord A exon
chr3:37642582-37642659
Coord C2 exon
chr3:37642750-37642865
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCACTTCTATCCAGCAT
3' ss Score
5.95
5' ss Seq
TTAGTAAGA
5' ss Score
3.78
Exon sequences
Seq C1 exon
GTTAGACGTGTCTCATTTGCAGATCCAATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGCTGCTCTGTTGTTAGGTCTCATTCTTCAAATAGCTCTCCTGTAATAAAAAGTGTTAAAACTTCACCTACTTCACACTCTAAG
Seq A exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACAGAGCTCTAAATTTAAGAGCTCAAAGAAGTGTTTA
Seq C2 exon
ATTACAGAAATGGCCCAAGAATCCATGCTATCCCCAACAGAAAGTGTTTACCCAGCTTTGGTGAACTGTGCAGCATCAGTTGACATCATTTTACCTCAGATTACATCAAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=0.462 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATAGGCGCTGCTCTGTTG
R:
CTGATGCTGCACAGTTCACCA
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]