DreEX6036107 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22989183-22989730:+
Coord C1 exon
chr9:22989183-22989305
Coord A exon
chr9:22989379-22989468
Coord C2 exon
chr9:22989615-22989730
Length
90 bp
Sequences
Splice sites
3' ss Seq
AATATCTTCTTTTGTTGCAGTAT
3' ss Score
8
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TCACGTCGAGTGTCTTTTGCAACTCCAATTTACCAGCAAGAACTGGCTGATGACATTGATCGTCGTAGTCCGGTTATTCGCACAAGTTCACCTAGGTCAAAAGTCTTGAGTGGACAGTCAAAG
Seq A exon
TATATCACTACACCAACAAAAGGTGGCTATACAAGTCTGAGTCCACGTAACCTCCGTAGCCCTGGATCCAAAAGCTCTAAAAAATGTCTG
Seq C2 exon
ATTTCAGAGATGAGCCAGGAGCCACGTCCTATTCCTAAAGATTGTGTTTATCCAGCACTTGTTGGCTGCTCTACTCCAGTAGAAGCTGTTCTGCCACAGATTTCCTCCAACATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'38-50,'38-48,39-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.805 A=0.933 C2=0.256
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAACTGGCTGATGACA
R:
ACTGGAGTAGAGCAGCCAACA
Band lengths:
169-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]