RnoEX0075839 @ rn6
Exon Skipping
Gene
ENSRNOG00000054901 | Rif1
Description
replication timing regulatory factor 1 [Source:RGD Symbol;Acc:1562474]
Coordinates
chr3:37638075-37642659:+
Coord C1 exon
chr3:37638075-37638971
Coord A exon
chr3:37642160-37642306
Coord C2 exon
chr3:37642582-37642659
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAACTATCCCGTACTTTCAGGTT
3' ss Score
8.39
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGAACACTGAAATTGACAATGCCAGGGTAAAGGATATGGACATGATTGCCAGCACCTCTAAATCTGAAGAAGCACTGATTGGGAGACTTGATGTCAACACTGAGGGCTTTGTTAGCGACATTGAAATGAGTTCTGGAGAAGGAACTGGTAAATGCAAAACTGAAACAAACATTGAACTTAATAAATTAGATGAAATAAAATTAGGTGGTAATCAAACTACAGTGGGAAATGAAACTCTGCAGGAAGTTTGCTTTACTTCAGAGAAAGTGGAGGAATTACCACAGCCTCTGATACCCGAAGTGACTTCTGAACTTGGAGCAGAAAGCAATAATGTATCCCCTGTCAAGTTAGAGCTGGATCCTTCCTTTGGATCAGCAAGTGAAAGTCCTAGTGGTGTGCAGGCACGCTGTGTCTGGTCGCCTTTGGCTTCTCCATCCACAAGCATTTTAAAGAGAGCACTAAAAAGATCCCAAGAAGATGAGATCTCACCAATTAACAAG
Seq A exon
GTTAGACGTGTCTCATTTGCAGATCCAATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGCTGCTCTGTTGTTAGGTCTCATTCTTCAAATAGCTCTCCTGTAATAAAAAGTGTTAAAACTTCACCTACTTCACACTCTAAG
Seq C2 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACAGAGCTCTAAATTTAAGAGCTCAAAGAAGTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054901-'46-46,'46-45,47-46
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.809 A=0.367 C2=0.462
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCCTCTGATACCCGAAGT
R:
TGGGGACAGAAATCCTTTGGC
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]