DreEX0062199 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22986140-22989468:+
Coord C1 exon
chr9:22986140-22989070
Coord A exon
chr9:22989183-22989305
Coord C2 exon
chr9:22989379-22989468
Length
123 bp
Sequences
Splice sites
3' ss Seq
TACATTTTTGTTGTGTGCAGTCA
3' ss Score
7.26
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
CAACACCTCAAGACACGTCTCCAAGTCAAGGTCGTCCAGTGGACGATGCACCAATATGCCAGGAGCAGTTAGAGTCTTCTCATGTCCAGCAGGAAGATGCAGTTAACCCAGCAGTGATGGAAAGAGAAGACCTTGCTGTGTCAGAGCAGAGACAAGAGAAGGCTGTGTTGTCTGAAGAGTTAGATGGAAAAGGTTTGCTTGACAAGGAAACTACTCTTGTTGAAAAGGAAGAAGAGATGCAGGTTAATAACCAGGATCTTCCTGTGGATGTCCAAGAAGAGTTACCTGTAGTGTCCCAGAGTAGCACATCTGAAGCCTGCTTGGATTCTCCACCCAAGCCAAAACTGTTAAGCGCACTCAGTGGTGAACTAGAGCCTGGCCAGAGTCCAACTAGAAGTCGGTCTCGAGTCTGGTCACCATCTGCTTCTCCGTCTACCAGTATTCTGAAGAAGGGTCAGAAGAGAGCATGTGAAGAGGAGACTCCATCCCCCATTCCCAAG
Seq A exon
TCACGTCGAGTGTCTTTTGCAACTCCAATTTACCAGCAAGAACTGGCTGATGACATTGATCGTCGTAGTCCGGTTATTCGCACAAGTTCACCTAGGTCAAAAGTCTTGAGTGGACAGTCAAAG
Seq C2 exon
TATATCACTACACCAACAAAAGGTGGCTATACAAGTCTGAGTCCACGTAACCTCCGTAGCCCTGGATCCAAAAGCTCTAAAAAATGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.989 A=0.805 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCACCCAAGCCAAAACTGT
R:
TTTTGGATCCAGGGCTACGGA
Band lengths:
246-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]