GgaEX1049354 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36793587-36797336:+
Coord C1 exon
chr7:36793587-36796361
Coord A exon
chr7:36796853-36796990
Coord C2 exon
chr7:36797259-36797336
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTCTGACAACAGATT
3' ss Score
7.49
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TGTCTGAGTGTGCTTCGGATGAGCCCAGCGACAGCTCTGTGGCTGCAGGGGATCAAAGTGAAGAGAAGGCAGCTGTAGAAAAGGAAGAAGAAAGCCAGCATGGGGAAATGGAGGAGGTCCCTGAGGCTGATGGTAGCAAACCTGAGACAAAACAGATGGATGAGCTGGAAGGCAATCGGGACGGCAAGGAGGAAGCTGAGAACGCTCTGGAAGAAGTTTGCATTACTCCAGATAACGAGATGAGAGAGGAACTGCTGGAAGCTGAAATCACAGTGCCTGAGAATGTGGCTGTAGGCAACAAAGATGTAGTAGTAGAAAATAAGAGTGCGGATTCGCCTCAGAAGCCAGAAGGCCTGGATTCTTTCACCTCGGTCAATGGGAGCCCCAGCGGTGTGCAGGCACGCTGCACGTGGTCTCCTTCAGCTTCCCCATCCACCAGCATTTTGAAGAGAGGTGTAAAAAGGCACCACGAGGACGATTCCTTGTCACCTGCTAATAAG
Seq A exon
ATTCGTCGGGTCTCTTTTGCCAATCCCATCTATCAGGAAGGACTGGCTGACGACATAGACAGGAGAAGTCCTGTCATTAGATCCCATTCTTCACCGTCTTCACGAAGTCTTAAAATCTTATCTAATATTCAGACTAAG
Seq C2 exon
CATATTACAACTCCAACCAAAGGATTTCTGTCCCCAGGATCTCGTAACCCTAAATTTAAGAGCTCAAAGAAGTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'43-46,'43-44,44-46=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.966 A=0.457 C2=0.615
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGAATGTGGCTGTAGGC
R:
GGACAGAAATCCTTTGGTTGGAGT
Band lengths:
258-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]