HsaEX6015891 @ hg19
Exon Skipping
Gene
ENSG00000080345 | RIF1
Description
RAP1 interacting factor homolog (yeast) [Source:HGNC Symbol;Acc:23207]
Coordinates
chr2:152319398-152325065:+
Coord C1 exon
chr2:152319398-152322634
Coord A exon
chr2:152324514-152324660
Coord C2 exon
chr2:152324988-152325065
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATCCTGACCTGTGTTTTCAGGTT
3' ss Score
9.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCCATGATGGTGAAACAGAGAATGAGGGCATAACTACCAAAACCTCAAAGCCTGATGAAGCTGAAACAAACATGTTGACTGCAGAAATGGACAACTTTGTTTGTGACACAGTTGAAATGAGCACTGAAGAAGGAATCATTGACGCTAATAAAACTGAAACAAATACTGAGTATAGTAAATCTGAAGAAAAATTAGATAACAATCAAATGGTAATGGAAAGTGATATTTTACAGGAAGATCACCATACTTCACAGAAAGTGGAGGAACCATCACAGTGTCTGGCATCTGGAACAGCTATCTCTGAGCTAATAATAGAAGACAATAATGCATCTCCTCAAAAACTAAGGGAACTTGATCCTTCACTTGTGTCAGCAAATGACAGTCCTAGTGGCATGCAGACACGCTGTGTCTGGTCTCCTTTGGCTTCTCCGTCTACGAGCATTTTAAAGAGAGGACTAAAAAGATCCCAAGAAGATGAAATCTCATCACCTGTTAATAAG
Seq A exon
GTTCGCCGTGTCTCCTTTGCAGATCCAATATACCAAGCAGGATTGGCAGATGACATTGATAGACGGTGCTCTATTGTTAGGTCCCATTCTTCCAATAGTTCTCCCATAGGAAAAAGTGTTAAAACTTCTCCTACTACACAATCTAAG
Seq C2 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACGTAGCCCTAAATTTAAGAGCTCAAAGAAGTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000080345-'35-38,'35-36,36-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.876 A=0.360 C2=0.503
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGTGTCTGGCATCTGGA
R:
AAATCCTTTGGCTGAAGTGGT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)