GgaEX1049354 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34667038-34670989:+
Coord C1 exon
chr7:34667038-34669812
Coord A exon
chr7:34670304-34670441
Coord C2 exon
chr7:34670874-34670989
Length
138 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTCTGACAACAGATT
3' ss Score
7.49
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
TGTCTGAGTGTGCTTCGGATGAGCCCAGCGACAGCTCTGTGGCTGCAGGGGATCAAAGTGAAGAGAAGGCAGCTGTAGAAAAGGAAGAAGAAAGCCAGCATGGGGAAATGGAGGAGGTCCCTGAGGCTGATGGTAGCAAACCTGAGACAAAACAGATGGATGAGCTGGAAGGCAATCGGGACGGCAAGGAGGAAGCTGAGAACGCTCTGGAAGAAGTTTGCATTACTCCAGATAACGAGATGAGAGAGGAACTGCTGGAAGCTGAAATCACAGTGCCTGAGAATGTGGCTGTAGGCAACAAAGATGTAGTAGTAGAAAATAAGAGTGCGGATTCGCCTCAGAAGCCAGAAGGCCTGGATTCTTTCACCTCGGTCAATGGGAGCCCCAGCGGTGTGCAGGCACGCTGCACGTGGTCTCCTTCAGCTTCCCCATCCACCAGCATTTTGAAGAGAGGTGTAAAAAGGCACCACGAGGACGATTCCTTGTCACCTGCTAATAAG
Seq A exon
ATTCGTCGGGTCTCTTTTGCCAATCCCATCTATCAGGAAGGACTGGCTGACGACATAGACAGGAGAAGTCCTGTCATTAGATCCCATTCTTCACCGTCTTCACGAAGTCTTAAAATCTTATCTAATATTCAGACTAAG
Seq C2 exon
ATGACAGAAATGGTGAAGGAGTCACTGCCTTCCCCTACGGAATGTGTGTATCCTGCCTTAGCTGGGTGTAAGGCACCCGTTGATGTAATTTTACCTCAGATCACATCAAATATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX2-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.457 C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTCGCCTCAGAAGCCAGAA
R:
TTACACCCAGCTAAGGCAGGA
Band lengths:
242-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]