MmuEX6101187 @ mm10
Exon Skipping
Gene
ENSMUSG00000036202 | Rif1
Description
replication timing regulatory factor 1 [Source:MGI Symbol;Acc:MGI:1098622]
Coordinates
chr2:52109911-52116745:+
Coord C1 exon
chr2:52109911-52113000
Coord A exon
chr2:52116248-52116394
Coord C2 exon
chr2:52116668-52116745
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATTTATCTTGTACTTTCAGATT
3' ss Score
9.01
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TGAGCACTGAAATTGACAGTGCCAGGGTAAAGGAGACGGACATACTTGCCAGTGCCTCTAAATCTGAAGAAGCGCTGATTGGAAGACTAGACGTCAACACCCAGAGCTTTGTTAGTGACATTGAAATGAGTTCTGGAGAAAGAACTGTTAATTGCAAAACTGAGACATCCATTGAACTTAATAAATTAGATGAAGCAAAATTAAGTGGCAATGAAGCTACAGTGGGAAATGATACTCTGCAGGAAGTTTGCTTTACTTCAGAGAAAGTGGAGAAATTACCACAGTGTCTGCTAGTTCAAGTGGCTTCTGAACTTGGAGCAGAAAGCAATACTACGTCTCCCGAAAAGTTAGAGCTGGATTCTTTTGGATCAGTAAATGAAAGTCCTAGTGGTATGCAGCAGGCACGTTGTGTCTGGTCACCTTTGGCTTCTCCATCCACAAGCATTTTAAAGAGAGGACTAAAAAGATCCCAAGAAGATGAGATCTCACCAGTTAACAAG
Seq A exon
ATTAGACGTGTCTCGTTTGCAGATCCAATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGTTGCTCTGTTGTTAGATCTCATTCTTCAAATAGCTCTCCCATAATAAAAAGTGTTAAAACTTCACCTACTTCACACTCTAAG
Seq C2 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACAGAGCTCTAAATTTAAGAGCCCAAAGAAGTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036202-'48-60,'48-56,51-60=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.841 A=0.327 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCTGAACTTGGAGCA
R:
TAGAGCTCTGTGATCCTGGGG
Band lengths:
253-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types