BtaEX0030455 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44768300-44773943:-
Coord C1 exon
chr2:44770725-44773943
Coord A exon
chr2:44768676-44768822
Coord C2 exon
chr2:44768300-44768377
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATGACTTAAATGTTTTCAGGTT
3' ss Score
7.66
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
TCACTGAAACCGAAGACGAAGATGTAACTACCACGGCTTCTCTGCCTATAGAAGTTGAAACAAAGGAATTAGATGTAGAAGTCAATAACTTTGTTCCCGACACACTTGAGATGATCACTGAAGAAGGAAAGGTTGACCCTAACAAAACTGAAACGAATACTGAACCTAATAAATTGGAGGAAACACAGTTAGATGACAATCAGATGGTAGTGGAAAGTAATGAAACTTTACCGGAAGTTCACCATACTTCAGAGAAAGTAGAGGAGATAGCACAACCTCTGACATCTGAAACAGATATTTCTGGACTAATATCAGAAGACAGTAATACATCTCCTCAAAAATCGAAGGATATTGATCCTTTACTCATGTCAGCAAACGAGAGTCCTAGTGGCATGCACACACGTTGTGTGTGGTCTCCTTTGGCTTCTCCATCCACCAGCATTTTAAAGAGAGGACTAAAAAGACCCCAAGAAGATGAAATCTCGTCACCTGTCCACAAG
Seq A exon
GTTCGCCGTGTCTCCTTTGCAGATCCTATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGATGCTCTATTGTTAGGTGCCATTCTTCAAATAGTTCTCTCATGGTAAAAAGTGTTAAAACTTCACCTACTGTGCAATCTAAG
Seq C2 exon
CATAATACCACTTCAGCCAAAGGATTTCTGTCCCCAGGATCACGTAGCTCTAAATTTAAGAGCTCAAAGAAGTGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'38-40,'38-38,40-40
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.214 C2=0.365
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAACCTCTGACATCTGAA
R:
AAATCCTTTGGCTGAAGTGGT
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development