MmuEX0019397 @ mm9
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52910234-52927644:+
Coord C1 exon
chr2:52910234-52910317
Coord A exon
chr2:52913488-52913640
Coord C2 exon
chr2:52927536-52927644
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCATTCCTTTTTTGTTTTAGTTT
3' ss Score
9.49
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
ATGGGTCAGAGAGTTTTTGAATGAAGAAAACAAAGGCCTTGATGTTCTTGTGGAGTATTTGTCTTTTGCACAGTATGCAGTCAC
Seq A exon
TTTTGACTTTGAAAGTGTGGAAAGTACCATGGAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTCG
Seq C2 exon
ATATAATACTTTGCCAAGCAGAAGAACCCTGAAAAATTCAAGATTAGTGAGTAAGAAGGATGATGTTCACGTTTGTATCATGTGTTTACGAGCCATCATGAATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.4=100)
A:
PF063718=Drf_GBD=PD(8.0=21.2)
C2:
PF063718=Drf_GBD=PU(44.6=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCAGAGAGTTTTTGAATGA
R:
CTGGTAATTCATGATGGCTCGT
Band lengths:
192-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types