GgaEX6043324 @ galGal4
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr7:35002156-35011276:+
Coord C1 exon
chr7:35002156-35002239
Coord A exon
chr7:35003538-35003690
Coord C2 exon
chr7:35011168-35011276
Length
153 bp
Sequences
Splice sites
3' ss Seq
AACATTTCTGTTTCCTTCAGGTT
3' ss Score
11.29
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTGGGTCAGAGAGTTCTTGAATGAAGAAAACAAAGGCCTGGATGTGCTGGTGGAGTACTTGTCATTTGCACAGTATGCAGTCAC
Seq A exon
GTTTGACTTTGAAAGCTTGGAGAACAACGTGGAAAACTCCATGGACAAGTCCAAGCCTTGGAGCCGGTCGATCGAGGACCTGCACAGGGGCAGCAATTTGCCCTCACCAGTTGGCAACAGTGCCTCGCGCTCTGGCAGGCACTCCACGCTGCG
Seq C2 exon
GTACAATACTTTGCCAAGCCGAAGAACTCTAAAAAATTCCAGACTAGTGAGTAAGAAAGACGACGTTCACGTCTGCATCATGTGTTTACGTGCCATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.486 C2=0.101
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(23.3=100)
A:
PF063718=Drf_GBD=PD(10.8=25.0)
C2:
PF063718=Drf_GBD=PU(45.3=91.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGTCAGAGAGTTCTTGAATGA
R:
TGGTAGTTCATGATGGCACGT
Band lengths:
192-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]