HsaEX0026042 @ hg38
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152558740-152575244:+
Coord C1 exon
chr2:152558740-152558823
Coord A exon
chr2:152560883-152561035
Coord C2 exon
chr2:152575136-152575244
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTCTTTTGTTTTAGTTT
3' ss Score
9.73
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATGGGTCAGAGAATTTCTGAATGAAGAAAACAAAGGTCTTGATGTTCTAGTGGAATATCTCTCATTTGCACAGTACGCGGTAAC
Seq A exon
TTTTGACTTTGAAAGTGTGGAGAGTACTGTGGAGAGCTCGGTGGACAAATCAAAGCCCTGGAGTAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTCTCCCGCTCTGGAAGACATTCTGCACTGCG
Seq C2 exon
ATATAATACATTGCCAAGCAGAAGAACTCTGAAAAATTCAAGATTAGTGAGTAAGAAAGATGATGTGCATGTCTGTATCATGTGTTTACGTGCCATCATGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_MULTIEX4-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.190 C2=0.012
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.4=100)
A:
PF063718=Drf_GBD=PD(8.0=21.2)
C2:
PF063718=Drf_GBD=PU(44.6=89.2)
Main Skipping Isoform:
ENST00000288670fB2773
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAATGAAGAAAACAAAGGTCT
R:
TGATAATTCATGATGGCACGTAAACA
Band lengths:
178-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development