BtaEX0014803 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43717420-43745134:-
Coord C1 exon
chr2:43745051-43745134
Coord A exon
chr2:43741956-43742108
Coord C2 exon
chr2:43717420-43717528
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTCTTTTGTTTTAGTTT
3' ss Score
9.73
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATGGGTCAGAGAGTTTCTGAATGAAGAAAACAAAGGTCTCGATGTTCTGGTAGAATATCTATCATTTGCGCAGTATGCAGTAAC
Seq A exon
TTTTGACTTTGAAAGTGTGGAGAGCACTGTGGAGAGCTCGGTGGACAAATCAAAGCCCTGGAGTCGGTCCATTGAGGACCTGCACAGAGGAAGCAACCTGCCTTCCCCCGTGGGCAACAGTGTATCCCGCTCGGGAAGACATTCTGCCCTGCG
Seq C2 exon
ATACAATACTTTGCCAAGCAGAAGAACCCTGAAAAATTCAAGATTAGTGAGTAAGAAAGATGACGTGCATGTCTGTATCATGTGTTTACGTGCCATCATGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851_MULTIEX2-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.173 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(23.7=100)
A:
PF063718=Drf_GBD=PD(9.3=21.2)
C2:
PF063718=Drf_GBD=PU(44.6=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAGTTTCTGAATGAAGAAAACAA
R:
CTGATAATTCATGATGGCACGTAA
Band lengths:
186-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development