HsaEX0026042 @ hg19
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153415254-153431758:+
Coord C1 exon
chr2:153415254-153415337
Coord A exon
chr2:153417397-153417549
Coord C2 exon
chr2:153431650-153431758
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTCTTTTGTTTTAGTTT
3' ss Score
9.73
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
Exon sequences
Seq C1 exon
ATGGGTCAGAGAATTTCTGAATGAAGAAAACAAAGGTCTTGATGTTCTAGTGGAATATCTCTCATTTGCACAGTACGCGGTAAC
Seq A exon
TTTTGACTTTGAAAGTGTGGAGAGTACTGTGGAGAGCTCGGTGGACAAATCAAAGCCCTGGAGTAGGTCCATCGAGGACCTGCACAGAGGGAGCAACCTGCCCTCACCTGTGGGCAACAGTGTCTCCCGCTCTGGAAGACATTCTGCACTGCG
Seq C2 exon
ATATAATACATTGCCAAGCAGAAGAACTCTGAAAAATTCAAGATTAGTGAGTAAGAAAGATGATGTGCATGTCTGTATCATGTGTTTACGTGCCATCATGAATTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.192 C2=0.014
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.4=100)
A:
PF063718=Drf_GBD=PD(8.0=21.2)
C2:
PF063718=Drf_GBD=PU(44.6=89.2)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGAATGAAGAAAACAAAGGTCT
R:
TGATAATTCATGATGGCACGTAAACA
Band lengths:
178-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)