DreEX6034949 @ danRer10
Exon Skipping
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4812221-4831664:-
Coord C1 exon
chr9:4831581-4831664
Coord A exon
chr9:4829839-4829994
Coord C2 exon
chr9:4812221-4812329
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTATGTGTTGTGCTTTACAGGTA
3' ss Score
11.75
5' ss Seq
AAGGTGCGA
5' ss Score
7.16
Exon sequences
Seq C1 exon
ATGGGTGCGGGAGTTTCTGAATGAGGAGAACAAGGGTTTGGATGTGTTGGTGGAGTATCTTTCGTTTGCACAGTATGCTGTCAC
Seq A exon
GTATGATGGTGATAGTTCTGAGAACAGCACAGAGAACTCGGTGGATAAATCTAAAGCCTGGAGCCGATCGATTGAGGATCTCCATGGAGGAAACCACCTCTCGTCTGGCGGCTCAGGCAGTAACATCTCTAGAACCAACAGACATTCAACAATAAG
Seq C2 exon
GTCTAATACGTTACCCAGCAGGAGGACATTGAAGAACTCCAGATTAGTATGTAAGAAAGACGACGTTCATGTGTGCATCATGTGTCTACGGGCTATCATGAACTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586-'4-8,'4-5,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.580 C2=0.108
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(19.6=100)
A:
PF063718=Drf_GBD=PD(11.9=32.1)
C2:
PF063718=Drf_GBD=PU(43.1=83.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCGGGAGTTTCTGAATGA
R:
CTGGTAGTTCATGATAGCCCGT
Band lengths:
190-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]