RnoEX0036404 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38595057-38609214:+
Coord C1 exon
chr3:38595057-38595140
Coord A exon
chr3:38598427-38598579
Coord C2 exon
chr3:38609106-38609214
Length
153 bp
Sequences
Splice sites
3' ss Seq
GCATTCCTTTCTTGTTTTAGTTT
3' ss Score
9.52
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
GTGGGTCAGAGAGTTTTTGAATGAGGAAAACAAAGGCCTTGATGTTCTTGTGGAGTATCTGTCCTTCGCACAGTATGCAGTCAC
Seq A exon
TTTTGACTTTGAAAGTGTGGAAAGTACCGTGGAGAGTACGGTGGACAAATCAAAGCCCTGGAGCAGGTCCATCGAGGACCTGCACAGAGGGAACAACCTGCCCTCCCCTGTGGGCAACAGTGTGTCCCGCTCTGGAAGACATTCTGCACTTCG
Seq C2 exon
ATATAATACCTTGCCAAGCAGAAGAACCTTGAAAAATTCAAGATTAGTGAGTAAGAAAGATGATGTTCATGTTTGTATCATGTGTTTACGGGCCATCATGAATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.269 C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(23.7=100)
A:
PF063718=Drf_GBD=PD(9.3=21.2)
C2:
PF063718=Drf_GBD=PU(44.6=89.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGTCAGAGAGTTTTTGAATGAGG
R:
TGGTAATTCATGATGGCCCGT
Band lengths:
191-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]