MmuEX0048685 @ mm9
Exon Skipping
Gene
ENSMUSG00000026875 | Traf1
Description
TNF receptor-associated factor 1 [Source:MGI Symbol;Acc:MGI:101836]
Coordinates
chr2:34814995-34817292:-
Coord C1 exon
chr2:34817040-34817292
Coord A exon
chr2:34816341-34816407
Coord C2 exon
chr2:34814995-34815033
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTAAACTTTGTATTGCAGTGT
3' ss Score
6.98
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGTATCTCAGGAGTGCAGCCACTGATGGAATGCTAGGAGTCAGCTAGCACCAGGACCCCAACAGAAGCACTCCAGTTCTGTTTCCTTGAGGGAGGAGCGATCAGCCCGCCCCCCGGCCAGCCTCCGAAGCCAGCCCAGCTCAGTCCCACCCGCCTGCCCAGCCCAGCTTCCCTTGGCTTCCGCCAGCCCAGCCCGGTTCTCTGCCCCAAGGACGCTACCGCCCGGTGCGAGCAGAAGGCGGCGCACAGGTTG
Seq A exon
TGTGAGAAGAGAGAGTGGATATGGGAGAAGAATTTGGGATAATTGCCAAGCTCATTTTAAAGCACAG
Seq C2 exon
ATACAGAAAGTGAGGCTCAGACATATTGAAGACCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026875_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGAAGCCAGCCCAG
R:
ACGGTCTTCAATATGTCTGAGCC
Band lengths:
168-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: