MmuEX0048682 @ mm9
Exon Skipping
Gene
ENSMUSG00000026875 | Traf1
Description
TNF receptor-associated factor 1 [Source:MGI Symbol;Acc:MGI:101836]
Coordinates
chr2:34814033-34816407:-
Coord C1 exon
chr2:34816341-34816407
Coord A exon
chr2:34814995-34815033
Coord C2 exon
chr2:34814033-34814131
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTTATCCCCCATTTTACAGATA
3' ss Score
10.36
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGTGAGAAGAGAGAGTGGATATGGGAGAAGAATTTGGGATAATTGCCAAGCTCATTTTAAAGCACAG
Seq A exon
ATACAGAAAGTGAGGCTCAGACATATTGAAGACCGTGTG
Seq C2 exon
ACATAGGGTAGCCAAATGACAGTGTGAGAAAGTGACATTTACTCAAGGCCACCCAGATATCCTGGAGGACCCAGAACCCTGGAGATTCCCATCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026875-'2-7,'2-3,5-7
Average complexity
ME(2_4-3_5[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGCTCATTTTAAAGCACA
R:
TCTGATGGGAATCTCCAGGGT
Band lengths:
120-159
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: