MmuEX0048685 @ mm10
Exon Skipping
Gene
ENSMUSG00000026875 | Traf1
Description
TNF receptor-associated factor 1 [Source:MGI Symbol;Acc:MGI:101836]
Coordinates
chr2:34959475-34961772:-
Coord C1 exon
chr2:34961524-34961772
Coord A exon
chr2:34960821-34960887
Coord C2 exon
chr2:34959475-34959513
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTTTAAACTTTGTATTGCAGTGT
3' ss Score
6.98
5' ss Seq
CAGGTCTGG
5' ss Score
5.06
Exon sequences
Seq C1 exon
GAGTATCTCAGGAGTGCAGCCACTGATGGAATGCTAGGAGTCAGCTAGCACCAGGACCCCAACAGAAGCACTCCAGTTCTGTTTCCTTGAGGGAGGAGCGATCAGCCCGCCCCCCGGCCAGCCTCCGAAGCCAGCCCAGCTCAGTCCCACCCGCCTGCCCAGCCCAGCTTCCCTTGGCTTCCGCCAGCCCAGCCCGGTTCTCTGCCCCAAGGACGCTACCGCCCGGTGCGAGCAGAAGGCGGCGCACAG
Seq A exon
TGTGAGAAGAGAGAGTGGATATGGGAGAAGAATTTGGGATAATTGCCAAGCTCATTTTAAAGCACAG
Seq C2 exon
ATACAGAAAGTGAGGCTCAGACATATTGAAGACCGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026875-'0-4,'0-1,4-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGAAGCCAGCCCAG
R:
CACACGGTCTTCAATATGTCTGA
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types