MmuINT0106858 @ mm9
Intron Retention
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25105314-25105717:-
Coord C1 exon
chr2:25105616-25105717
Coord A exon
chr2:25105524-25105615
Coord C2 exon
chr2:25105314-25105523
Length
92 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GATAGTTCCACTTTCCACAGCTT
3' ss Score
5.22
Exon sequences
Seq C1 exon
GCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAATGGTTATGTACCCAGTACCCCTTGACATTCCTGAGATTCCTCATGGAGTCCC
Seq A exon
GTGAGTCTGAGCCTTGGGTATATGAATATCAAGGGACTTTGAGCTGTTTTATGCCCCCCAGGCCACCCAACTGATAGTTCCACTTTCCACAG
Seq C2 exon
CTTGCCCTCCAAGTTCATCTTTCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTCAACATAGCCAGCTCAGCCCCTCAGACACCCCCATCAGAGTTACAGCCCTTCCTGGCACCTGTGATCACCAACCAGAGGGTCACTGGCCCCCAACACTTTCAGGATGTTCGGCTGATTGAATTTGACATTACAGACTCCAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-Ndor1:NM_001082476:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.099
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(14.2=47.1)
A:
NA
C2:
PF0025820=Flavodoxin_1=PD(17.1=28.2),PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACCCAGTACCCCTTGACA
R:
GTGATCACAGGTGCCAGGAAG
Band lengths:
178-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: