HsaINT0111733 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140108419-140108865:+
Coord C1 exon
chr9:140108419-140108520
Coord A exon
chr9:140108521-140108655
Coord C2 exon
chr9:140108656-140108865
Length
135 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ACCAGCGTGCCCTCCCACAGCCT
3' ss Score
7.16
Exon sequences
Seq C1 exon
GCCCGACGCTGCTGTGGACCCCTGGCTGCGAGACTTGTGGGACAGGGTTCTGGGGCTGTACCCGCCGCCTCCGGGCCTCACTGAGATCCCTCCCGGAGTCCC
Seq A exon
GTGAGTGTGGGCCCCGGGTCACCCACAGGCGCAGCAGACCCAACCTGGCCTGGGGACCTCGCCCTGGGTCCCTCCCGTGTGGGTGGGCGGCCCCTGGGGAGTGGGTCCTGGTCTGACCAGCGTGCCCTCCCACAG
Seq C2 exon
CCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCCAGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCTAGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACATCTTGGGCTCTGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.363
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
A:
NA
C2:
PF0025820=Flavodoxin_1=PD(3.7=7.0),PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTGTGGGACAGGGTTCT
R:
AACTCAATCAGCCGAACGTCC
Band lengths:
258-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)