BtaINT0100317 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105886747-105887136:-
Coord C1 exon
chr11:105887035-105887136
Coord A exon
chr11:105886957-105887034
Coord C2 exon
chr11:105886747-105886956
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GAGTGTCTGGCCCTTCACAGTTG
3' ss Score
6.2
Exon sequences
Seq C1 exon
GCCCGATGCCGCCATCGACCCCTGGCTGCAGGATCTGTGGGAGAAGGTGCTGGGGCCGCACCCTGTGCCTCTGAACCTTGACCTGAGCCCTCCTGGAGTCCT
Seq A exon
GTAAGTGTGGCCTTGGGGTGGCACCCACCCACACAGCAGACCTGGCCAGCAGTCTGACGAGTGTCTGGCCCTTCACAG
Seq C2 exon
TTGGCCCTCCAAGTTCACCCTGCAGTTCCTCAAGGACACCCCCAGCTCAGGCCCGGAGGAGCTGTGTGCGGCCGGAACAGACCCTCAGGGACCCCCTTCAGAGCTACAGCCGTTCCTGGCACCCATGGTCAGCAATCAGAGGGTCACGGGGCCCTCGCACTTCCAGGATGTTCGGCTGATTGAGTTCGACATCTCGGGCTCTGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
A:
NA
C2:
PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTCTGAACCTTGACCTGA
R:
TGACCCTCTGATTGCTGACCA
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development