RnoINT0099545 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2469204-2469606:-
Coord C1 exon
chr3:2469505-2469606
Coord A exon
chr3:2469414-2469504
Coord C2 exon
chr3:2469204-2469413
Length
91 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
GATAGTTCCACTTTCCACAGCTT
3' ss Score
5.22
Exon sequences
Seq C1 exon
GCCCGATGCTGCCATTGACCCCTGGGTAGGAGACCTTTGGGAGAAGATAATGACTATGTACCCTGTACCCCTCGACATTCCTGAGATCCCTCATGGAGTCCC
Seq A exon
GTGAGTCTGAACCTTGGGTATATGAATATCAAGGGACTTCAAGCTATTTTATCCCCCCAGCCCACCCAACTGATAGTTCCACTTTCCACAG
Seq C2 exon
CTTGCCCTCCAAGTTCATCTTCCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTGAACCTCGCCAGTTCAGCCCCTCAGACACCCCCCTCAGAGTTACAGCCCTTTCTGGCTCCTGTGGTCACCAACCAGAGGGTCACTGGCCCCCAACACTTCCAGGACGTTCGGCTGATGGAGTTTGACATTACAGAGTCGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
A:
NA
C2:
PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTACCCCTCGACATTCCT
R:
GTGACCACAGGAGCCAGAAAG
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]