DreINT0103037 @ danRer10
Intron Retention
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31892700-31893107:+
Coord C1 exon
chr5:31892700-31892801
Coord A exon
chr5:31892802-31892903
Coord C2 exon
chr5:31892904-31893107
Length
102 bp
Sequences
Splice sites
5' ss Seq
TAAGTCAGT
5' ss Score
-0.63
3' ss Seq
TCCATAATTGTTTTTTTTAGACT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GCCAGATGGTGTGATTGATCCCTGGCTGCTTTCATTTTGGCAGAAAACTCTGTCTCTCTACCCTCCTCCAGCCGGCCTCGCTCCACTCCGCGAGGAAGATAA
Seq A exon
GTCAGTCTGTCTCATAATCTAACACTCATGCTTTCAAAATACTAGACAAATAATCAATATAAATATTACAGTTTTTATTTAATCCATAATTGTTTTTTTTAG
Seq C2 exon
ACTTCCACCGCGATACATTTTCCACTTTCTATCTGAAGTCCCAAATAAACCGACTGAGCATCTCCAGACAGTGGATAATAAAAGCTCTCCCACCTCACTGCGGCCGTTTCCAGCTCCACTAGTGTTTAATCAGAGAGTCACTCATACTGCACATTTCCAGGACGTCAGACACATCGAGTTCGACATCACAGGCTCTAACATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429:ENSDART00000033545:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.174
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
A:
NA
C2:
PF0066715=FAD_binding_1=PU(17.7=56.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTGCTTTCATTTTGGC
R:
GACGTCCTGGAAATGTGCAGT
Band lengths:
248-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]