GgaINT0126431 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1345329-1346016:+
Coord C1 exon
chr17:1345329-1345430
Coord A exon
chr17:1345431-1345809
Coord C2 exon
chr17:1345810-1346016
Length
379 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CATTGCTACAATTCCCACAGCCT
3' ss Score
5.78
Exon sequences
Seq C1 exon
GCCAGATGCAGTGGTTGATCCGTGGCTCCTAGCCTTATGGGACAAGATCCTTGCCCTGTATCCTCTCCCTCCTGGCCTCGAGGTCATCAGTCCTGATGTATG
Seq A exon
GTGAGTGTAGAGGCTTGCTGGAAATGGCTGGTGCGAAATGTCTTCTGTGACTGTTCTCTGGGGTGGAGAGATGTTTCTAGGGTGGAGGCCAAGACACCTCCCAACAAAGCTACTGATGTCTCAAGCATTCCTAAGACCTAACTACTCCCACTAGACGGGCTTACTTTGCTCTGCTTGCTTCAACATCTTTGAGATCTCCTCCTGACAGTATTGCTGCATTGTGATCTCTTACCATGAGCCAGCTCCAAGGGACAGGGGTGATGGGTGGTGGATGTTGTAGGAGACTTCAGAGTGTCCCTGCCTCCCTGTAAAGCTAAGGCAGTGGACAAGCTGTGGCATGGAGATGACTGCACTGACTGCATTGCTACAATTCCCACAG
Seq C2 exon
CCTGCCCCCTAGATACACCCTGCACTACCTGGCTGAGGACTCCTTGCACTCTGACAGCAGCCTGCTCCAGCCAACACCACCCAGGGCTCTTCCTTCTGAGCTACATCCCTTTGCTGCCCGGATGGTGTCCAACCAGCGCATCACGGCCGAATCCCATTTCCAGGATGTCCGGCTCATTGAGTTTGATGTCACAGGATCAGGGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.057
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
A:
NA
C2:
PF0066715=FAD_binding_1=PU(17.4=54.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGCAGTGGTTGATCCGTG
R:
GTGATCCCTGATCCTGTGACA
Band lengths:
306-685
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]