HsaEX0042224 @ hg19
Exon Skipping
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140108232-140108865:+
Coord C1 exon
chr9:140108232-140108330
Coord A exon
chr9:140108419-140108520
Coord C2 exon
chr9:140108656-140108865
Length
102 bp
Sequences
Splice sites
3' ss Seq
GCGCACGTGCTCCCTCCCAGGCC
3' ss Score
6.76
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGACGGCTACTGCAGCTTGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCATGAGCTGGG
Seq A exon
GCCCGACGCTGCTGTGGACCCCTGGCTGCGAGACTTGTGGGACAGGGTTCTGGGGCTGTACCCGCCGCCTCCGGGCCTCACTGAGATCCCTCCCGGAGTCCC
Seq C2 exon
CCTGCCCTCCAAGTTCACCCTGCTGTTCCTCCAAGAGGCACCCAGCACGGGCTCTGAGGGGCAGCGGGTAGCTCACCCCGGCTCTCAGGAGCCCCCGTCAGAGTCGAAGCCCTTCCTAGCACCCATGATCTCCAACCAGAGAGTCACCGGCCCCTCCCACTTCCAGGACGTTCGGCTGATTGAGTTTGACATCTTGGGCTCTGGCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.086 C2=0.363
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
C2:
PF0025820=Flavodoxin_1=PD(3.7=7.0),PF0066715=FAD_binding_1=PU(18.1=56.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCGTGGCCAAGAAGC
R:
CGGTGACTCTCTGGTTGGAGA
Band lengths:
246-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)