DreEX0049787 @ danRer10
Exon Skipping
Gene
ENSDARG00000007429 | ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1555]
Coordinates
chr5:31891905-31894549:+
Coord C1 exon
chr5:31891905-31892003
Coord A exon
chr5:31892700-31892801
Coord C2 exon
chr5:31894335-31894549
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTATTACTCCTCAGGCC
3' ss Score
9.14
5' ss Seq
TAAGTCAGT
5' ss Score
-0.63
Exon sequences
Seq C1 exon
GTTCAACTTTGTAGCTAAGAAGCTCCACAAGCGTTTGCTTCAGCTTGGTGCAAATATGCTGCTGCCTGTTGGACTGGCTGATGACCAGCATGACCTGGG
Seq A exon
GCCAGATGGTGTGATTGATCCCTGGCTGCTTTCATTTTGGCAGAAAACTCTGTCTCTCTACCCTCCTCCAGCCGGCCTCGCTCCACTCCGCGAGGAAGATAA
Seq C2 exon
AAGTTCCTGCACGTCTTCCTCAGCCCTGCTCTGTTCGTTTTCTGCTGGAACACTTCCTGGACATTTCTGCTGTCCCACGGCGTTCCTTCTTTGAGCTTCTGGCCACTTTTGCCACTGATGAACTGGAGCAGGAAAAACTCTTGGAGTTTAGCTCTGCTGCGGGTCAGGATGCTCTTCACTCCTACTGCAACAGACCTCGCCGAACAGCGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007429_MULTIEX1-2/6=1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.029 C2=0.028
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
C2:
PF0066715=FAD_binding_1=FE(32.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGCTGCTGCCTGTTGGAC
R:
CGAGGTCTGTTGCAGTAGGAG
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]