GgaEX0013055 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1344797-1346016:+
Coord C1 exon
chr17:1344797-1344895
Coord A exon
chr17:1345329-1345430
Coord C2 exon
chr17:1345810-1346016
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCTCAGTGTCTCACTTGCAGGCC
3' ss Score
9.03
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTTTAATTTTATTGCCAAGAAGCTGTACAAACGGGTGCTACAGCTTGGGGGCAACCCGCTGCTGCCAGTTGCATTGGGAGATGACCAGCACGACTTGGG
Seq A exon
GCCAGATGCAGTGGTTGATCCGTGGCTCCTAGCCTTATGGGACAAGATCCTTGCCCTGTATCCTCTCCCTCCTGGCCTCGAGGTCATCAGTCCTGATGTATG
Seq C2 exon
CCTGCCCCCTAGATACACCCTGCACTACCTGGCTGAGGACTCCTTGCACTCTGACAGCAGCCTGCTCCAGCCAACACCACCCAGGGCTCTTCCTTCTGAGCTACATCCCTTTGCTGCCCGGATGGTGTCCAACCAGCGCATCACGGCCGAATCCCATTTCCAGGATGTCCGGCTCATTGAGTTTGATGTCACAGGATCAGGGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX1-4/12=3-5
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
C2:
PF0066715=FAD_binding_1=PU(17.4=54.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAAACGGGTGCTACAGC
R:
GAGCCGGACATCCTGGAAATG
Band lengths:
251-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]