BtaEX6047534 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105886747-105887319:-
Coord C1 exon
chr11:105887221-105887319
Coord A exon
chr11:105887035-105887136
Coord C2 exon
chr11:105886747-105886956
Length
102 bp
Sequences
Splice sites
3' ss Seq
GTGTGTACCTGATTCTGCAGGCC
3' ss Score
8.09
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGCCGGCTGCTGCAGCTCGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCACGAACTGGG
Seq A exon
GCCCGATGCCGCCATCGACCCCTGGCTGCAGGATCTGTGGGAGAAGGTGCTGGGGCCGCACCCTGTGCCTCTGAACCTTGACCTGAGCCCTCCTGGAGTCCT
Seq C2 exon
TTGGCCCTCCAAGTTCACCCTGCAGTTCCTCAAGGACACCCCCAGCTCAGGCCCGGAGGAGCTGTGTGCGGCCGGAACAGACCCTCAGGGACCCCCTTCAGAGCTACAGCCGTTCCTGGCACCCATGGTCAGCAATCAGAGGGTCACGGGGCCCTCGCACTTCCAGGATGTTCGGCTGATTGAGTTCGACATCTCGGGCTCTGGGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'7-10,'7-9,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.338
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
C2:
PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTCGTGGCCAAGAAGC
R:
CGTGACCCTCTGATTGCTGAC
Band lengths:
245-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]