RnoEX6015811 @ rn6
Exon Skipping
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2469204-2469786:-
Coord C1 exon
chr3:2469688-2469786
Coord A exon
chr3:2469505-2469606
Coord C2 exon
chr3:2469204-2469413
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTACTCTTTCCTAGGCC
3' ss Score
9.85
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCAACTTTGTGGCCAAGAAGCTCCATCGCAGGCTGCTGCAGCTAGGAGGCAATGCCCTCGTGCCTCCGTGTCTGGGTGACGACCAGCATGAGTTAGG
Seq A exon
GCCCGATGCTGCCATTGACCCCTGGGTAGGAGACCTTTGGGAGAAGATAATGACTATGTACCCTGTACCCCTCGACATTCCTGAGATCCCTCATGGAGTCCC
Seq C2 exon
CTTGCCCTCCAAGTTCATCTTCCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTGAACCTCGCCAGTTCAGCCCCTCAGACACCCCCCTCAGAGTTACAGCCCTTTCTGGCTCCTGTGGTCACCAACCAGAGGGTCACTGGCCCCCAACACTTCCAGGACGTTCGGCTGATGGAGTTTGACATTACAGAGTCGAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.9=100)
A:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
C2:
PF0066715=FAD_binding_1=PU(18.1=56.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGAAGCTCCATCGCAGG
R:
GAACGTCCTGGAAGTGTTGGG
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]