MmuEX6099438 @ mm9
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25105314-25105898:-
Coord C1 exon
chr2:25105800-25105898
Coord A exon
chr2:25105616-25105717
Coord C2 exon
chr2:25105314-25105523
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGCCTGTACTCTTTCCTAGGCC
3' ss Score
8.98
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GTTCAACTTTGTGGCCAAGAAGCTACATCGTAGGCTGCTGCAGCTAGGAGGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGG
Seq A exon
GCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAATGGTTATGTACCCAGTACCCCTTGACATTCCTGAGATTCCTCATGGAGTCCC
Seq C2 exon
CTTGCCCTCCAAGTTCATCTTTCAGTTTCTTCAGGAGGTCCCCAGCATAGGGGCTGAGGAGCTCAACATAGCCAGCTCAGCCCCTCAGACACCCCCATCAGAGTTACAGCCCTTCCTGGCACCTGTGATCACCAACCAGAGGGTCACTGGCCCCCAACACTTTCAGGATGTTCGGCTGATTGAATTTGACATTACAGACTCCAATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-'8-16,'8-15,11-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(32.0=100)
A:
PF0025820=Flavodoxin_1=PD(14.2=47.1)
C2:
PF0025820=Flavodoxin_1=PD(17.1=28.2),PF0066715=FAD_binding_1=PU(18.1=56.3)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACATCGTAGGCTGCTGCAG
R:
CATCCTGAAAGTGTTGGGGGC
Band lengths:
247-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: