GgaEX0013054 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1344008-1346016:+
Coord C1 exon
chr17:1344008-1344105
Coord A exon
chr17:1344797-1344895
Coord C2 exon
chr17:1345810-1346016
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTGATTATTCTCTGCCTAGGTT
3' ss Score
8.45
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATGTTCTGGCGGTTTCTGTTCCGGAAGAACCTGCCGCCTACTTCCCTTTGCCAGATGGACTACGCCGTGCTGGGCCTTGGTGATTCCTCCTATCCCAA
Seq A exon
GTTTAATTTTATTGCCAAGAAGCTGTACAAACGGGTGCTACAGCTTGGGGGCAACCCGCTGCTGCCAGTTGCATTGGGAGATGACCAGCACGACTTGGG
Seq C2 exon
CCTGCCCCCTAGATACACCCTGCACTACCTGGCTGAGGACTCCTTGCACTCTGACAGCAGCCTGCTCCAGCCAACACCACCCAGGGCTCTTCCTTCTGAGCTACATCCCTTTGCTGCCCGGATGGTGTCCAACCAGCGCATCACGGCCGAATCCCATTTCCAGGATGTCCGGCTCATTGAGTTTGATGTCACAGGATCAGGGATCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX1-3/12=2-5
Average complexity
C2
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.057
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
PF0025820=Flavodoxin_1=FE(23.9=100)
C2:
PF0066715=FAD_binding_1=PU(17.4=54.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTTGCCAGATGGACTACG
R:
GCAGCAAAGGGATGTAGCTCA
Band lengths:
172-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]