BtaEX6047533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105887035-105888362:-
Coord C1 exon
chr11:105888265-105888362
Coord A exon
chr11:105887221-105887319
Coord C2 exon
chr11:105887035-105887136
Length
99 bp
Sequences
Splice sites
3' ss Seq
CAGCTCTGTCTTCTCTGTAGGTT
3' ss Score
9.31
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
AGTTTCTGGAGGTTCATCTTCCGGAGGAGCCTGCCATCCACTGCCCTCCGTCAGATGGACTTTGCTGTGCTGGGTCTCGGGGACTCGTCTTACGCCAA
Seq A exon
GTTCAACTTCGTGGCCAAGAAGCTGCACCGCCGGCTGCTGCAGCTCGGGGGCAGCGCCCTCCTGCCCGTGTGCCTGGGCGATGACCAGCACGAACTGGG
Seq C2 exon
GCCCGATGCCGCCATCGACCCCTGGCTGCAGGATCTGTGGGAGAAGGTGCTGGGGCCGCACCCTGTGCCTCTGAACCTTGACCTGAGCCCTCCTGGAGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'5-9,'5-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(23.2=100)
A:
PF0025820=Flavodoxin_1=FE(23.9=100)
C2:
PF0025820=Flavodoxin_1=PD(5.8=22.9)
Main Skipping Isoform:
ENSBTAT00000066145fB4633
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGAGGTTCATCTTCCGG
R:
TCAGGTCAAGGTTCAGAGGCA
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]