MmuEX0031237 @ mm10
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25250096-25251818:-
Coord C1 exon
chr2:25251721-25251818
Coord A exon
chr2:25250280-25250378
Coord C2 exon
chr2:25250096-25250197
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTTACTGTCTCCACCCACAGGTT
3' ss Score
11.72
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
AACTTCTGGAGGTTCATATTCCGGAAGAGCCTGCCGTCCAGCTCCCTCTGTCAAATGGATTTTGCTGTCCTAGGCCTCGGGGATTCCTCATATGCCAA
Seq A exon
GTTCAACTTTGTGGCCAAGAAGCTACATCGTAGGCTGCTGCAGCTAGGAGGCAGTGCGCTTCTGCCCCCATGTCTGGGTGATGACCAGCATGAGCTGGG
Seq C2 exon
GCCTGATGCTGCCATTGACCCCTGGGTAGGAGATCTTTGGGAGAAGATAATGGTTATGTACCCAGTACCCCTTGACATTCCTGAGATTCCTCATGGAGTCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471_MULTIEX2-2/3=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0025820=Flavodoxin_1=FE(27.4=100)
A:
PF0025820=Flavodoxin_1=FE(23.9=100)
C2:
PF0025820=Flavodoxin_1=PD(14.2=47.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATATTCCGGAAGAGCCTGCC
R:
CAGGAATGTCAAGGGGTACTGG
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types