MmuEX0047460 @ mm9
Exon Skipping
Gene
ENSMUSG00000041997 | Tlk1
Description
tousled-like kinase 1 [Source:MGI Symbol;Acc:MGI:2441683]
Coordinates
chr2:70608061-70663785:-
Coord C1 exon
chr2:70663250-70663785
Coord A exon
chr2:70624934-70625052
Coord C2 exon
chr2:70608061-70608132
Length
119 bp
Sequences
Splice sites
3' ss Seq
GCTTCTCTCTCTCTTCATAGGTG
3' ss Score
12.76
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TGATGCAGAGGTTACCCCGCCGCCTCAGCCGCCACCCACCGCCCGCCACCGCCCGGGCGACGCCGGGGCCCGACGCACTGCAGAGGTGCCGGCAGGTTCCGCCCGCGGAAGTGGCCTCGGTCGGCGCGGCCCGCGCTCCGCCCGCGCTCCGGCCCCGGCCCCGCGGCCCCGGCCACTCGCCTCCCCTCGGCGCTACCCTCCCCGCCCGCCCTCCGCCCGGCGCGCTCCCTCGGCGGCGCGGCGCTCCCCTCCCAGCCCTCGCGCCCGCGCTCGCCCTCAGCGCGGCCCCCGCCATGACGGAGGCGGGTGCCGGTGCCGCCGCCGTCGCAGGGGGGGAGTCGGGCTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCGGCTCTCCACGTCTCCAACCCCGGGCTCGGCGGCGGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG
Seq A exon
GTGCAATGGATGAGCTTCACAGTCTGGACCCAAGAAGGCAAGAATTATTGGAAGCAAGATTTACTGGAGTTGCTACTGGGAGTACTGGGAGTACTGGGAGTTGCAGTGTTGGAGCAAAA
Seq C2 exon
GCTTCAACAAATAATGAAAGTTCTAATCACAGTTTTGGAAGCTTAGGATCTCTAAGTGACAAAGAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041997_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.996 A=0.949 C2=1.000
Domain overlap (PFAM):
C1:
PF0165911=Luteo_Vpg=PU(93.8=95.7)
A:
PF0165911=Luteo_Vpg=PD(23.7=35.0)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACGGAGGCGGGTG
R:
TCCTAAGCTTCCAAAACTGTGA
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: