DreEX6019957 @ danRer10
Exon Skipping
Gene
ENSDARG00000100715 | tlk1b
Description
tousled-like kinase 1b [Source:ZFIN;Acc:ZDB-GENE-030131-4933]
Coordinates
chr6:3745213-3763890:-
Coord C1 exon
chr6:3763588-3763890
Coord A exon
chr6:3746925-3747043
Coord C2 exon
chr6:3745213-3745284
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTGTTTGTAGGTA
3' ss Score
10.14
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTGAGGATCTCTGCGCAGTGCGGAGCTGAAAACATGAGCAGCGTTGCATTGATCATCGGTGTTTGTGCGTGATGCATTAAACACACACGCTCACACACACAGGTGTGATTTGACGGAGATCATGCGCGCGATGCGCTGGGCGTCTCTTCGCGGGGGAAAGTGTCTTCATGAGTGTCCAAAGTAACAGCAACAGCAGTGGAAGTTTGGACGGAGCGCCATCTTGCTCTCAGTTCTCGACTGGATCTCCGACCCCGGGCTCAGTTTCTCCGCTCGATATATTCGCTCCGCGGAGGCATAAAGAAG
Seq A exon
GTATGGATGAGCTGCATTCTCTGGATCCACGCCGGCAGGAGCTTTTGGAGGCACGTTTCATTGGGGCTGTGAGTGGCAACACGGGAGGAAGCACAGGGAGCGCGAGCGGTGGACCTAAG
Seq C2 exon
GGTTTGAACAATAACGAGTGCTCCAGTCACAGTTTTGGCAGCCTGGGGTCATCGAGTGACAAGGAGTCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100715-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACACACGCTCACACACA
R:
ACTGTGACTGGAGCACTCGTT
Band lengths:
258-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]