RnoEX0090859 @ rn6
Exon Skipping
Gene
ENSRNOG00000060572 | Tlk1
Description
tousled-like kinase 1 [Source:RGD Symbol;Acc:1310370]
Coordinates
chr3:57070491-57119001:-
Coord C1 exon
chr3:57118788-57119001
Coord A exon
chr3:57084009-57084127
Coord C2 exon
chr3:57070491-57070562
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTTTCTCTTAATAGGTG
3' ss Score
11.52
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
CCCCGCCATGACGGAGGCGGGTGCCGGTGCCGCCGCCGTCGCAGGGGGGGAGTCGGGCTCCCAGAAAGTAGCTTGATGAGTGTCCAAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCGGCTCTCCACGTCTCCAACCCCAGGCTCGGCGGCAGCGGCCAGGTCCCTGCTGAATCACACGCCGCCATCCGGGAGGCCCAGGGAAG
Seq A exon
GTGCAATGGATGAACTTCACAGTCTGGATCCAAGAAGGCAAGAATTATTGGAAGCGAGATTTACTGGAGTTGCTACTGGGAGCACTGGGAGTACTGGGAGTTGCAGTGTTGGAGCGAAA
Seq C2 exon
GCTTCAACAAATAATGAAAGTTCTAATCACAGTTTTGGAAGCTTAGGATCTCTAAGTGACAAAGAATCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060572_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.900 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATGACGGAGGCGGGTG
R:
TCCTAAGCTTCCAAAACTGTGA
Band lengths:
257-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]